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Genomics of Drug Sensitivity in Cancer
We have characterised 1000 human cancer cell lines and screened them with 100s of compounds.
On this website, you will find drug response data and genomic markers of sensitivity.
Overview
Our website and results are part of an ongoing research project. These webpages are updated frequently and our results are not final or complete.
What's new?
Release 8.5 (October 2023)
Release 8.5 fixes a bug in the fitting of dose response curves in the GDSC2 dataset for 39 compounds where the concentration range differs between cell lines. IC50 values are highly correlated between releases 8.4 and 8.5 for the 14106 curves affected - a minimum Pearson correlation per compound of 0.888. Removing SN-38 from the dataset improves the minimum correlation to 0.995. The GDSC1 dataset remains unchanged from release 8.4.
Datasets
| GDSC1 | GDSC2 |
|---|---|
| Age | |
| from 2010 to 2015 | ✓ NEW |
| Size | |
| 970 Cell lines | 969 Cell lines |
| 403 Compounds | 297 Compounds |
| 333292 IC50s | 243466 IC50s |
| Assay | |
| Resazurin or Syto60 | CellTitreGlo |
| Duration | |
| 72 hours | 72 hours |
Key Publications
Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells.
Yang et al., (2013) Nucl. Acids Res. 41 (Database issue): D955 - D961. (PMID:23180760
)
A landscape of pharmacogenomic interactions in cancer
Iorio et al., (2016). Cell, Volume 166, Issue 3, 740 - 754
(PMID:27397505
)
Systematic identification of genomic markers of drug sensitivity in cancer
cells
Garnett et al., (2012) Nature volume 483, pages 570 – 575 (PMID:27397505
)
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Please note: The data files are experimental and academic in nature and are not licensed or certified by any regulatory body. Genome Research Limited provides access to data files on an “as is” basis and excludes all warranties of any kind (express or implied).
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