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./math/R-genetics, Classes and methods for handling genetic data
[
Branch: CURRENT, Version: 1.3.8.1.3nb1, Package name: R-genetics-1.3.8.1.3nb1, Maintainer: pkgsrc-users
Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple
markers on multiple chromosomes. Function include allele frequencies,
flagging homo/heterozygotes, flagging carriers of certain alleles,
estimating and testing for Hardy-Weinberg disequilibrium, estimating
and testing for linkage disequilibrium, ...
Required to run:
[math/R-gdata] [math/R-mvtnorm] [math/R-gtools] [math/R] [math/R-combinat]
Required to build:
[pkgtools/cwrappers]
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Branch: CURRENT, Version: 1.3.8.1.3nb1, Package name: R-genetics-1.3.8.1.3nb1, Maintainer: pkgsrc-users
Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple
markers on multiple chromosomes. Function include allele frequencies,
flagging homo/heterozygotes, flagging carriers of certain alleles,
estimating and testing for Hardy-Weinberg disequilibrium, estimating
and testing for linkage disequilibrium, ...
Required to run:
[math/R-gdata] [math/R-mvtnorm] [math/R-gtools] [math/R] [math/R-combinat]
Required to build:
[pkgtools/cwrappers]
Master sites: (Expand)
- https://cran.r-project.org/src/contrib/
- https://lib.stat.cmu.edu/R/CRAN/src/contrib/
- https://stat.ethz.ch/CRAN/src/contrib/
- https://www.stats.bris.ac.uk/R/src/contrib/
- https://cran.r-project.org/src/contrib/Archive/genetics/
- https://lib.stat.cmu.edu/R/CRAN/src/contrib/Archive/genetics/
- https://stat.ethz.ch/CRAN/src/contrib/Archive/genetics/
- https://www.stats.bris.ac.uk/R/src/contrib/Archive/genetics/
Version history: (Expand)
- (2025-10-24) Package has been reborn
- (2025-10-24) Package deleted from pkgsrc
- (2025-07-15) Package has been reborn
- (2025-07-15) Package deleted from pkgsrc
- (2022-06-28) Updated to version: R-genetics-1.3.8.1.3nb1
- (2021-09-11) Updated to version: R-genetics-1.3.8.1.3
CVS history: (Expand)
| 2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952) |
Log message: *: recursive bump for perl 5.36 |
| 2021-10-26 12:56:13 by Nia Alarie | Files touched by this commit (458) |
Log message: math: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes |
| 2021-10-07 16:28:36 by Nia Alarie | Files touched by this commit (458) |
Log message: math: Remove SHA1 hashes for distfiles |
| 2021-09-11 16:28:04 by Makoto Fujiwara | Files touched by this commit (2) |
Log message: (math/R-genetics) Updated to 1.3.8.1.3, ChangeLog unknown |
| 2021-05-24 21:56:06 by Thomas Klausner | Files touched by this commit (3575) |
Log message: *: recursive bump for perl 5.34 |
| 2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) |
Log message: *: bump PKGREVISION for perl-5.32. |
| 2019-08-11 15:25:21 by Thomas Klausner | Files touched by this commit (3557) |
Log message: Bump PKGREVISIONs for perl 5.30.0 |
2019-08-08 21:53:58 by Brook Milligan | Files touched by this commit (189) |  |
Log message: Update all R packages to canonical form. The canonical form [1] of an R package Makefile includes the following: - The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as needed), and CATEGORIES. - HOMEPAGE is not present but defined in math/R/Makefile.extension to refer to the CRAN web page describing the package. Other relevant web pages are often linked from there via the URL field. This updates all current R packages to this form, which will make regular updates _much_ easier, especially using pkgtools/R2pkg. [1] https://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html |