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sequence-formats: A package with basic parsing utilities for several Bioinformatic data formats.
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sequence-formats: A package with basic parsing utilities for several Bioinformatic data formats.
Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses.
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- sequence-formats-1.11.0.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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For package maintainers and hackage trustees
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| Versions [RSS] | 1.1.4.1, 1.3.1, 1.3.2, 1.3.2.1, 1.3.3, 1.4.0, 1.4.0.1, 1.4.1, 1.5.0, 1.5.1, 1.5.1.1, 1.5.1.2, 1.5.1.3, 1.5.1.4, 1.5.2, 1.6.0, 1.6.1, 1.6.3, 1.6.6.0, 1.6.6.1, 1.6.7.0, 1.7.0, 1.7.1, 1.8.0.0, 1.8.0.1, 1.8.1.0, 1.8.1.1, 1.9.0.0, 1.10.0.0, 1.11.0.0, 1.11.0.1, 1.11.0.2 |
|---|---|
| Change log | Changelog.md |
| Dependencies | attoparsec (>=0.14.4), base (>=4.7 && <5), bytestring (>=0.11.5.3), containers (>=0.6.7), errors (>=2.3.0), exceptions (>=0.10.7), foldl (>=1.4.17), lens-family (>=2.1.3), pipes (>=4.3.16), pipes-attoparsec (>=0.6.0), pipes-bytestring (>=2.1.7), pipes-safe (>=2.3.5), pipes-zlib (>=0.4.4.2), streaming-commons (>=0.2.2.6), transformers (>=0.6.1.0), vector (>=0.13.1.0) [details] |
| License | GPL-3.0-only |
| Author | Stephan Schiffels |
| Maintainer | stephan.schiffels@mac.com |
| Uploaded | by stephan_schiffels at 2025-06-11T06:12:49Z |
| Category | Bioinformatics |
| Home page | https://github.com/stschiff/sequence-formats |
| Bug tracker | https://github.com/stschiff/sequence-formats/issues |
| Distributions | LTSHaskell:1.11.0.2, NixOS:1.11.0.2, Stackage:1.11.0.2 |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Downloads | 7384 total (124 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs available [build log] Last success reported on 2025-06-11 [all 1 reports] |
Readme for sequence-formats-1.11.0.2
[back to package description]Sequence-Formats is a Haskell package to provide file parsers and writers for some commonly, and less commonly used file formats in Bioinformatics, speficially population genetics.
The library makes heavy use of the pipes library to provide Producers and Consumers for reading and writing files.