LOTUS is a comprehensive collection of documented structure-organism pairs. Within the frame of current computational approaches in Natural Products research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry.

For additional details on this first project of the LOTUS Initiative please have a look at our preprint https://lotusnprod.github.io/lotus-manuscript

As the shorter READMEs are the best, we decided to give detailed documentation in our Wiki. ❤️ You will find important information in the different wikis, with solutions to the most common issues. 💡

If you are in a hurry and just want a quick test without reading the whole documentation, what you need is:

• R
• Python 3
• Java >= 17

Please make sure to have Make installed.

As steps are a bit longer, we made a dedicated Wiki for Windows users.

git clone https://github.com/lotusnprod/lotus-processor.git
cd lotus-processor
conda env create --file environment.yml
conda activate lotus_env
make MODE=test lotus-bloom

if everything worked smoothly you can then:

make MODE=test lotus-check

• The data used to support the findings of this study have been deposited on Zenodo https://zenodo.org/communities/the-lotus-initiative. A snapshot of the repository at the time of publication is also available under the same link.
• Outputs of the lotus-processor will be regularly archived at https://zenodo.org/record/5665295

All data sources used for this study are listed under docs/dataset.csv

Please read contributing for details on our code of conduct, and the process for submitting pull requests.

• Adriano Rutz - Initial work - Adafede
• Pierre-Marie Allard - Investigator - oolonek
• Jonathan Bisson - Hacker in Chief - bjonnh

See also the list of contributors who participated in this project.

This project is licensed under the GNU GPLv3 license - see license file for details