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Donglai Wei
My group advances AI4Neuroscience by developing foundation models for large-scale biomedical image
analysis and AI-augmented science discovery.
Our research is generously supported by NSF CAREER Award, NIH R01, and Gates Foundation.
Geometry-Informed ML: Incorporating geometric priors for better segmentation
 |
|
Donglai Wei |
| Assistant Professor of Computer Science |
| Boston College |
| Office: 245 Beacon St., Rm 528F |
| Email: donglai.wei [AT] bc.edu |
My group advances AI4Neuroscience by developing foundation models for large-scale biomedical image
analysis and AI-augmented science discovery.
Our research is generously supported by NSF CAREER Award, NIH R01, and Gates Foundation.
I spent memorable postdoc years at Harvard University, working with
Hanspeter Pfister and
Jeff Lichtman.
I was fortunate to be advised by William Freeman during my Ph.D.
at MIT CSAIL. As an undergraduate in Mathematics at Brown University (after transferring from Tsinghua
University), I had the privilege to work under Charles
Lawrence, Erik Sudderth, Stuart Geman, and See-Chen Ying.
Now Looking For: phDs (directly apply here), postdocs, visiting scholars and research interns.
Research Highlights
Geometry-Informed ML: Incorporating geometric priors for better segmentation
- - Invariance: TMI'25
- - Foundation Model: JBHI'25
- - Shape Representation:
MedIA'25
MICCAI'23
ISBI'23
CVPR'20
CVPR'19
Biomedical Benchmarks: Identifying bottlenecks for model development
- - Image Registration: Alignment (RnR-ExM)
- - Segmentation:
- = Low-Res: Blood Vessel (BvEM), Nuclei (NucMM, NucExM,
WormID-bench)
- = High-Res: Neuron (AxonEM, DenSpineEM), Synapse (WASPSYN, EM-R50),
Organelle (MitoEM)
- - Medical: General (MedMNIST), Rib (RibSeg, RibFrac), Lung (PTL)
- - Packages: BiaPy (Nature Methods'25), VesiclePy (bioRxiv'25)
PytorchConnectomics (arXiv'21)
AI-Augmented Science Discovery: Extracting insights from raw measurements
- - Causal Modeling:
CVPR'18
CVPR'14
ICML'24
- - Question Answering:
ICLR'24
ECCV'24
NeurIPS'24
- - Human-Computer Interface:
VIS'23
Neuroscience Advancement: Integrating multimodal data for brain understanding
- - Connectomics:
Science'24
Nature Comm.'24
Nature Methods'23
- - Spatial Transcriptomics: Nature Comm.'24
- - Systems: arXiv'24
- = Low-Res: Blood Vessel (BvEM), Nuclei (NucMM, NucExM, WormID-bench)
- = High-Res: Neuron (AxonEM, DenSpineEM), Synapse (WASPSYN, EM-R50), Organelle (MitoEM)
Group Members
| Postdoc: | Peng Liu |
||
| SDE: | Mansour Alawi | ||
| Undergrad: | Adam Gohain | Tian-hao Zhang | Boyu Shen |
| Xander Widener | Pan He | ||
| Visitor/Intern: | Deepan Roy | Qiong Wang |
Teaching
Publications [AI, Dataset, Neuroscience, Discovery]
| 2025 | |
 |
Ultrastructural Reconstruction of the Endodermal Nerve Net of Hydra VulgarisShulin Zhang, Netanel Ofer, Wataru Yamomoto, Paige Nurkin, Richard Schalek, Yuelong Wu, Christoph Dupre, Xueying Wang, Michael Lin, Micaela Roth, Jason Adhinarta, Adam Gohain, Yutian Fan, Donglai Wei, Jeff Lichtman, Rafael Yuste
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Multiplexed, scalable analog recording of gene regulation dynamics over weeks using intracellular protein tapesLirong Zheng, Yixiao Yan, Bingxin Zhou, Jormay Lim, Dongqing Shi, Bobae An, BumJin Ko, Emily Klyder, Sethuramasundaram Pitchiaya, Denise Cai, Edward Boyden, Donglai Wei, Pietro Liò, Changyang Linghu
|
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A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brainMariela Petkova, ..., Donglai Wei, ..., Florian Engert
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Developmental Connectomics of the Mouse CerebellumNagaraju Dhanyasi, Yaron Meirovitch, Vikrant Kapoor, Alyssa Wilson, Shuohong Wang, Donglai Wei, Richard Schalek, Rong Ma, Yuelong Wu, Akhila Manthena, Diego Cordero Cervantes, Zudi Lin, Yunlei Liu, Sanjana Chimaladinne, Benjamin Morris, Indu Vaddiparti, Yan Zhu, Sanjana Dokiburra, Riti Parampalli, Fuming Yang, Daniel Berger, Hanspeter Pfister, Venkatesh Murthy, Jeff Lichtman
|
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Frenet-Serret Frame-based Decomposition for Part Segmentation of 3D Curvilinear Structures
Leslie Gu, Jason Ken Adhinarta, Mikhail Bessmeltsev, Jiancheng Yang, Jessica Zhang, Wenjie Yin, Daniel Berger, Jeff Lichtman, Hanspeter Pfister, Donglai Wei
|
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Deep Rib Fracture Instance Segmentation and Classification from CT on the RibFrac Challenge
Jiancheng Yang, Rui Shi, Liang Jin, Xiaoyang Huang, Kaiming Kuang, Donglai Wei, Shixuan Gu, Jianying Liu, Pengfei Liu, Zhizhong Chai, Yongjie Xiao, Hao Chen, Liming Xu, Bang Du, Xiangyi Yan, Hao Tang, Adam Alessio, Gregory Holste, Jiapeng Zhang, Xiaoming Wang, Jianye He, Lixuan Che, Hanspeter Pfister, Ming Li, Bingbing Ni
|
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TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM imagesJia Wan, Wanhua Li, Jason Ken Adhinarta, Atmadeep Banerjee, Evelina Sjostedt, Jingpeng Wu, Jeff Lichtman, Hanspeter Pfister, Donglai Wei
|
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Efficient Anatomical Labeling of Pulmonary Tree Structures via Deep Point-Graph Representation-based Implicit FieldsKangxian Xie, Jiancheng Yang, Donglai Wei, Ziqiao Weng, Pascal Fua
|
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SynAnno: Interactive Guided Proofreading of Synaptic AnnotationsLeander Lauenburg, Jakob Troidl, Adam Gohain, Zudi Lin, Hanspeter Pfister, Donglai Wei
|
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BiaPy: Accessible Deep Learning on BioimagesDaniel Franco-Barranco, Jesuś Andrés-San Román, Ivan Hidalgo-Cenalmor, Lenka Backová, Aitor
González-Marfil, Clément Caporal, Anatole Chessel, Pedro Gómez-Gálvez, Luis M. Escudero,
Donglai Wei, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
|
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VesiclePy: A Machine Learning Vesicle Analysis Toolbox for Volume Electron MicroscopyJason Adhinarta, Yutian Fan, Adam Gohain, Michael Lin, Paige Nurkin, Richard Ren, Micaela Roth, Shulin Zhang, Ayal Yakobe, Rafael Yuste, Donglai Wei
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MitoEM 2.0: A Benchmark for Challenging 3D Mitochondria Instance Segmentation from EM ImagesPeng Liu, Boyu Shen, Liyuan Liu, Qiong Wang, Shulin Zhang, Abhishek Bhardwaj, Ignacio Arganda-Carreras, Kedar Narayan, Donglai Wei
|
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Deep Learning for Clinical Ultrasound Imaging: From Supervised Approaches to Foundation ModelsKeshi He, Donglai
Wei, Bryan Ranger
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Enhancing Newborn Health Assessment: Ultrasound-based Body Composition Prediction Using Deep LearningKeshi He, Julia Hohenberg, Yi Li, Audrey Xiao, Hayoung Cho, Emily Nagel, Sara Ramel, Katherine Bell, Donglai
Wei, Jinhee Park, Bryan Ranger
|
| 2024 | |
 |
A Connectomic Study of A Petascale Fragment of Human Cerebral CortexAlexander Shapson-Coe, Michał Januszewski, Daniel Berger, Art Pope, Yuelong Wu, Tim Blakely,
Richard Schalek, Peter Li, Shuohong Wang, Jeremy Martin-Shepard, Neha Karlupia, Sven Dorkenwald,
Evelina Sjostedt, Laramie Leavitt, Dongil Lee, Luke Bailey, Angerica Fitzmaurice, Rohin Kar,
Benjamin Field, Hank Wu, Julian Wagner-Carena, David Aley, Joanna Lau, Zudi Lin, Donglai
Wei, Hanspeter Pfister, Adi Peleg, Viren Jain, Jeff W. Lichtman
|
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Multiplexed Expansion Revealing for Imaging of Multiprotein Nanostructures in Healthy and Diseased BrainJinyoung Kang, Margaret Schroeder, Youngmi Lee, Chaitanya Kapoor, Eunah Yu, Tyler B. Tarr, Kat
Titterton, Menglong Zeng, Demian Park, Emily Niederst, Donglai Wei, Guoping Feng, Edward
Boyden
|
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Multiplexed Volumetric CLEM Enabled by scFvs Provides Insights Into the Cytology of Cerebellar CortexXiaomeng Han, Xiaotang Lu, Peter Li, Shuohong Wang, Richard Schalek, Yaron Meirovitch, Zudi Lin,
Jason Adhinarta, Daniel Berger, Yuelong Wu, Tao Fang, Elif Sevde Meral, Shadnan Asraf, Hidde
Ploegh, Hanspeter Pfister, Donglai Wei, Viren Jain, James Trimmer, Jeff Lichtman
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The Time is Ripe to Reverse Engineer an Entire Nervous System: Simulating Behavior from Neural InteractionsGal Haspel, ..., Donglai Wei , ..., Konrad Kording
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R2-Tuning: Efficient Image-to-Video Transfer Learning for Video Temporal GroundingYe Liu, Jixuan He, Wanhua Li, Junsik Kim, Donglai Wei, Hanspeter Pfister, Chang Wen
Chen
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SocialGPT: Prompting LLMs for Social Relation Reasoning via Greedy Segment OptimizationWanhua Li*, Zibin Meng*, Jiawei Zhou, Donglai Wei, Chuang Gan, Hanspeter Pfister
|
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Learning Causal Domain-Invariant Temporal Dynamics for Few-Shot Action RecognitionYuke Li*, Guangyi* Chen, Ben Abramowitz, Stefano Anzellotti, Donglai Wei
|
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LLCP: Learning Latent Causal Processes for Reasoning-based Video Question AnswerGuangyi Chen*, Yuke Li*, Xiao Liu, Zijian Li, Eman Al Suradi, Donglai Wei, Kun Zhang
|
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VizAbility: Enhancing Chart Accessibility with LLM-based Conversational InteractionJoshua Gorniak, Yoon Kim, Donglai Wei, Nam Wook Kim
|
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S3-TTA: Scale-Style Selection for Test-Time Augmentation in Biomedical Image Segmentation
Kangxian Xie, Siyu Huang, Sebastian Andres Cajas Ordonez, Hanspeter Pfister, Donglai
Wei
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WASPSYN: A Challenge for Domain Adaptive Synapse Detection in Microwasp Brain ConnectomesYicong Li, Wanhua Li, Qi Chen, Wei Huang, Yuda Zou, Xin Xiao, Kazunori Shinomiya, Pat Gunn,
Nishika Gupta, Alexey Polilov, Yongchao Xu, Yueyi Zhang, Zhiwei Xiong, Hanspeter Pfister,
Donglai Wei, Jingpeng Wu
|
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RibSeg v2: A Large-scale Benchmark for Rib Labeling and Anatomical Centerline ExtractionLiang Jin, Shixuan Gu, Donglai Wei, Jason Adhinarta, Kaiming Kuang, Yongjie Zhang,
Hanspeter Pfister, Bingbing Ni, Jiancheng Yang, Ming Li
|
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Two-stage Error Detection to Improve Electron Microscopy Image MosaickingHongyu Ge, Jiahao Shi, Shuohong Wang, Donglai Wei, Jiancheng Yang, Ao Cheng, Richard
Schalek, Jun Guo, Jeff Lichtman, Lirong Wang, Ruobing Zhang
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BlastAssist: A Deep Learning Pipeline to Measure Interpretable Features of Human EmbryosHelen Yang, Brian Leahy, Won-Dong Jang, Donglai Wei, Yael Kalma, Roni Rahav, Ariella
Carmon, Rotem Kopel, Foad Azem, Marta Venturas, Colm Kelleher, Liz Cam, Hanspeter Pfister,
Daniel Needleman, Dalit Ben-Yosef
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Ultrasound for assessing paediatric body composition and nutritional status: Scoping review and future directionsBryan Ranger, Allison Lombardi, Susie Kwon, Mary Loeb, Hayoung Cho, Keshi He, Donglai
Wei, Jinhee Park
|
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Real-Time Point of Interest Segmentation for Electron Microscopy Images via Machine Learning
Michael Lin, Yousra Nahas, Prokhorenko Sergei, Sujit Das, Ruijuan Xu, Harold Hwang, Ramamoorthy
Ramesh, Laurent Bellaiche, David Muller, Yu-Tsun Shao, Donglai Wei
|
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Learning Gaze-aware Compositional GAN from Limited Annotations
Nerea Aranjuelo Ansa, Siyu Huang, Ignacio Arganda-Carreras, Luis Unzueta Irurtia, Oihana Otaegui
Madurga, Hanspeter Pfister, Donglai Wei
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Learning Socio-Temporal Graphs for Multi-Agent Trajectory Prediction
Yuke Li, Lixiong Chen, Guangyi Chen, Ching-Yao Chan, Kun Zhang, Stefano Anzellotti, Donglai
Wei
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| 2023 | |
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Dense 4D nanoscale reconstruction of living brain tissuePhilipp Velicky, Eder Miguel, Julia M. Michalska, Donglai Wei, Zudi Lin, Jake F. Watson,
Jakob Troidl, Johanna Beyer, Yoav Ben-Simon, Christoph Sommer, Wiebke Jahr, Alban Cenameri,
Johannes Broichhagen, Seth G. N. Grant, Peter Jonas, Gaia Novarino, Hanspeter Pfister, Bernd
Bickel, Johann G. Danzl
|
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Immersion fixation and staining of multi-cubic millimeter volumes for electron microscopy-based connectomics of human brain biopsiesNeha Karlupia, Richard Schalek, Yuelong Wu, Yaron Meirovitch, Donglai Wei, Alexander
Charney, Brian Kopell, Jeff Lichtman
|
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A large-scale volumetric correlated light and electron microscopy study localizes Alzheimer's disease-related molecules in the hippocampusXiaomeng Han, Shuohong Wang, Morgan Sanchez, Sneha Aggarwal, Richard Schalek, Yaron Meirovitch,
Zudi Lin, Yuelong Wu, Fatima Aly, Sylvie Bay, Benoît Delatour, Pierre Lafaye, Hanspeter Pfister,
Donglai Wei, Hidde Ploegh, Jeff Lichtman
|
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CLIPTrans: Transferring Visual Knowledge with Pre-trained Models for Multimodal Machine TranslationDevaansh Gupta, Siddhant Kharbanda, Jiawei Zhou, Wanhua Li, Hanspeter Pfister, Donglai
Wei
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Vimo: Visual Analysis of Neuronal Connectivity MotifsJakob Troidl, Simon Warchol, Jinhan Choi, Jordan Matelsky, Nagaraju Dhanyasi, Xueying Wang,
Brock Wester, Donglai Wei, Jeff Lichtman, Hanspeter Pfister, Johanna Beyer
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VizAbility: Multimodal Accessible Data Visualization with Keyboard Navigation and Conversational InteractionJoshua Gorniak, Jake Ottiger, Donglai Wei, Nam Wook Kim
|
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Domain-Scalable Unpaired Image Translation via Latent Space AnchoringSiyu Huang, Jie An, Donglai Wei, Zudi Lin, Jiebo Luo, Hanspeter Pfister
|
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QuantArt: Quantizing Image Style Transfer Towards High Visual FidelitySiyu Huang, Jie An, Donglai Wei, Jiebo Luo, Hanspeter Pfister
|
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Why is the winner the best?Matthias Eisenmann, ..., Donglai Wei, ..., Lena Maier-hein
|
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Current Progress and Challenges in Large-scale 3D Mitochondria Instance SegmentationDaniel Franco-Barranco, Zudi Lin, Won-Dong Jang, Xueying Wang, Qijia Shen, Wenjie Yin, Yutian
Fan, Mingxing Li, Chang Chen, Zhiwei Xiong, Rui Xin, Hao Liu, Huai Chen, Zhili Li, Jie Zhao,
Xuejin Chen, Constantin Pape, Ryan Conrad, Luke Nightingale, Joost de Folter, Martin Jones,
Yanling Liu, Dorsa Ziaei, Stephan Huschauer, Ignacio Arganda-Carreras, Hanspeter Pfister,
Donglai Wei
|
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Structure-Preserving Instance Segmentation via Skeleton-Aware Distance TransformZudi Lin, Donglai Wei, Aarush Gupta, Xingyu Liu, Deqing Sun, Hanspeter Pfister
|
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High-Throughput Microscopy Image Deblurring with Graph Reasoning Attention NetworkYulun Zhang, Donglai Wei, Richard Schalek, Yuelong Wu, Stephen Turney, Jeff Lichtman,
Hanspeter Pfister, Yun Fu
|
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Learning Vector Quantized Shape Code for Amodal Blastomere Instance SegmentationWon-Dong Jang, Donglai Wei, Xingxuan Zhang, Brian Leahy, Helen Yang, James Tompkin, Dalit
Ben-Yosef, Daniel Needleman, Hanspeter Pfister
|
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Multi-task Curriculum Learning for Partially Labeled DataWon-Dong Jang, Stanislav Lukyanenko, Donglai Wei, Jiancheng Yang, Brian Leahy, Helen
Yang, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister
|
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3D Domain Adaptive Instance Segmentation Via Cyclic Segmentation GANsLeander Lauenburg, Zudi Lin, Ruihan Zhang, Márcia dos Santos, Siyu Huang, Ignacio
Arganda-Carreras, Edward Boyden, Hanspeter Pfister, Donglai Wei
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Real-time Image Deblurring to Improve Throughput of Serial-Section Volume Electron Microscopy for Neural Connectomic StudiesRichard Schalek, Nandan Parikh, Yuelong Wu, Jeff Lichtman, Yulun Zhang, Donglai Wei
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| 2022 | |
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YouMVOS: An Actor-centric Multi-shot Video Object Segmentation DatasetDonglai Wei, Siddhant Kharbanda, Sarthak Arora, Roshan Roy, Nishant Jain, Akash Palrecha,
Tanav Shah, Shray Mathur, Ritik Mathur, Abhijay Kemka, Anirudh Chakravarthy, Zudi Lin, Won-Dong
Jang, Yansong Tang, Song Bai, James Tompkin, Philip H.S. Torr, Hanspeter Pfister
|
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Texture-based Error Analysis for Image Super-ResolutionSalma Abdel Magid, Zudi Lin, Donglai Wei, Yulun Zhang, Jinjin Gu, Hanspeter Pfister
|
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Scalable Biologically-Aware Skeleton Generation for Connectomic VolumesBrian Matejek, Tim Franzmeyer, Donglai Wei, Xueying Wang, Jinglin Zhao,
Kálmán Palágyi, Jeff W. Lichtman, Hanspeter Pfister
|
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UnMICST: Deep Learning with Real Augmentation for Robust Segmentation of Highly Multiplexed Images of Human TissuesClarence Yapp, Edward Novikov, Won-Dong Jang, Yu-An Chen, Marcelo Cicconet, Zoltan Maliga,
Connor A. Jacobson, Donglai Wei, Sandro Santagata, Hanspeter Pfister, Peter K.
Sorger
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Edge-Colored Directed Subgraph Enumeration on the ConnectomeBrian Matejek, Donglai Wei, Tianyi Chen, Charalampos Tsourakakis, Michael Mitzenmacher,
Hanspeter Pfister
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MedMNIST v2: A Large-Scale Lightweight Benchmark for 2D and 3D Biomedical Image ClassificationJiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bilian Ke, Hanspeter Pfister,
and Bingbing Ni
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| 2021 | |
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Learning to Generate Realistic Noisy Images via Pixel-level Noise-aware Adversarial TrainingYuanhao Cai, Xiaowan Hu, Haoqian Wang, Yulun Zhang, Hanspeter Pfister, Donglai Wei
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Dynamic High-Pass Filtering and Multi-Spectral Attention for Image Super-ResolutionSalma Abdel Magid, Yulun Zhang, Donglai Wei, Won-Dong Jang, Zudi Lin, Yun Fu, Hanspeter
Pfister
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Context Reasoning Attention Network for Image Super-ResolutionYulun Zhang, Donglai Wei, Can Qin, Huan Wang, Hanspeter Pfister, Yun Fu
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AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical RegionsDonglai Wei*, Kisuk Lee*, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang,
Márcia dos Santos, Zudi Lin, Thomas Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek,
Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
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NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter ScaleZudi Lin*, Donglai Wei*, Mariela Petkova, Yuelong Wu, Zergham Ahmed, Krishna Swaroop K,
Silin Zou, Nils Wendt, Jonathan Boulanger-Weill, Xueying Wang, Nagaraju Dhanyasi, Ignacio
Arganda-Carreras, Florian Engert, Jeff Lichtman, Hanspeter Pfister
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RibSeg Dataset and Strong Point Cloud Baselines for Rib Segmentation from CT ScansJiancheng Yang, Shixuan Gu, Bingbing Ni, Donglai Wei, Hanspeter Pfister
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Developmental Stage Classification of Embryos Using Two-Stream Neural Network with Linear-Chain Conditional Random FieldStanislav Lukyanenko, Won-Dong Jang, Donglai Wei, Robbert Struyven, Yoon Kim, Brian
Leahy, Helen Yang, Alexander Rush, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister
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Consistent Recurrent Neural Networks for 3D Neuron SegmentationFelix Gonda, Donglai Wei, Hanspeter Pfister
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The Wood Image Analysis and Dataset (WIAD): open-access visual analysis tools to advance the ecological data revolutionTim Rademacher, Bijan Seyednasrollah, David Basler, Jian Cheng, Tessa Mandra, Elise Miller, Zudi
Lin, David A Orwig, Neil Pederson, Hanspeter Pfister, Andrew D Richardson, Donglai Wei,
Li Yao
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| 2020 | |
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Super-BPD: Super Boundary-to-Pixel Direction for Fast Image SegmentationJianqiang Wan, Yang Liu, Donglai Wei, Xiang Bai, Yongchao Xu
|
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A Topological Nomenclature for 3D Shape Analysis in ConnectomicsAbhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Don
Jang, Xueying Wang, Jeff Lichtman, Hanspeter Pfister
|
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Two-Stream Active Query Suggestion for Large-Scale Object Detection in ConnectomicsZudi Lin, Donglai Wei, Won-Dong Jang, Siyan Zhou, Xupeng Chen, Xueying Wang, Richard L.
Schalek, Daniel R. Berger, Brian Matejek, Lee D. Kamentsky, Adi Peleg, Daniel Haehn, Thouis R.
Jones, Toufiq Parag, Jeff Lichtman, Hanspeter Pfister
|
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MitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM ImagesDonglai Wei, Zudi Lin, Daniel Franco-Barranco, Nils Wendt, Xingyu Liu, Wenjie Yin, Xin
Huang, Aarush Gupta, Won-Dong Jang, Xueying Wang, Ignacio Arganda-Carreras, Jeff Lichtman,
Hanspeter Pfister
|
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Automated Measurement of Key Morphological Features of Human Embryos for IVFBrian Leahy*, Won-Dong Jang*, Helen Yang*, Robbert Struyven, Donglai Wei, Zhe Sun, Kylie
R. Lee, Charlotte Royston, Liz Cam, Yael Kalma, Foad Azem, Dalit Ben-Yosef, Hanspeter Pfister,
Daniel Needleman
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Channel Embedding for Informative Protein Identification from Highly Multiplexed ImagesSalma A. Magid, Won-Dong Jang, Denis Schapiro, Donglai Wei, James Tompkin, Peter Sorger,
Hanspeter Pfister
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Pulse-driven robot: Motion via Solitary WavesBolei Deng, Liyuan Chen, Donglai Wei, Vincent Tournat, Katia Bertoldi
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| 2019 | |
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Video Enhancement with Task-Oriented FlowTianfan Xue, Baian Chen, Jiajun Wu, Donglai Wei, William T. Freeman
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Synapse-Aware Skeleton Generation for Neural CircuitsBrian Matejek, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán
Palágyi, Hanspeter Pfister
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Biologically-Constrained Graphs for Global Connectomics ReconstructionBrian Matejek, Daniel Haehn, Haidong Zhu, Donglai Wei, Toufiq Parag, Hanspeter
Pfister
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| 2018 | |
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Learning and Using the Arrow of TimeDonglai Wei, Joseph Lim, Andrew Zisserman, Wlliam T. Freeman
|
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Parallel Separable 3D Convolution for Video and Volumetric Data UnderstandingFelix Gonda, Donglai Wei, Toufiq Parag, Hanspeter Pfister
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Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep NetsToufiq Parag, Daniel Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz
Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister
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| Before 2018 | |
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Motion Microscopy for Visualizing and Quantifying Small MotionsNeal Wadhwa, Justin G. Chen, Jonathan B. Sellon, Donglai Wei, Michael Rubinstein, Roozbeh
Ghaffari, Dennis M. Freeman, Oral Büyüköztürk, Pai Wang, Sijie Sun, Sung Hoon Kang, Katia
Bertoldi, Fredo Durand, William T. Freeman
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Mining Visual Evolution in 21 Years of Web DesignAli Jahanian, Philip Isola, Donglai Wei
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Deviation Magnification: Revealing Departures from Ideal GeometriesNeal Wadhwa, Tali Dekel, Donglai Wei, Fredo Durand, William T. Freeman
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Understanding Intra-Class Knowledge inside CNNDonglai Wei, Bolei Zhou, Antonio Torralba, William T. Freeman
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Seeing the Arrow of TimeLindsey Pickup, Zheng Pan, Donglai Wei, Yichang Shih, Changshui Zhang, Andrew Zisserman,
Bernhard Schölkopf, William T. Freeman
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A Data-driven Regularization Model for Stereo and FlowDonglai Wei, Ce Liu, William T. Freeman
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Video Representation Using Temporal SuperpixelsJason Chang, Donglai Wei, John Fisher III
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Learning Deformations with Parallel TransportDonglai Wei, Dahua Lin, John Fisher III
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RNAG: A New Gibbs Sampler for Predicting RNA Secondary Structure for Unaligned SequencesDonglai Wei, Lauren Alpert and Charles Lawrence
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Challenges/Workshops
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MedAGI: Foundation Models for General Medical AIWon-Ki Jeong, Hyunwoo Kim, Yiqing Shen, Zhongying Deng, Edward Choi, Junjun He, Hoon Cho,
Donglai Wei, Jin Ye, Jing Ke |
 |
RnR-ExM: Robust Non-rigid Registration Challenge for Expansion Microscopy VolumesEmma Besier, Ruihan Zhang, Yosuke Bando, Yves Quéméner, Chaitanya Kapoor, Mansour Alawi,
Malte Hoffmann, Adrian Dalca, Adrià Casamitjana, Ignacio Arganda-Carreras, Ed Boyden,
Hanspeter Pfister, Donglai Wei |
|
An Out-of-Domain Synapse Detection Challenge for Microwasp Brain ConnectomesJingpeng Wu, Yicong Li, Kazunori Shinomiya, Pat Gunn, Alexey Polilov, Hanspeter Pfister,
Dmitri Chklovskii, Donglai Wei |
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XPRESS: Xray Projectomic Reconstruction (Extracting Segmentation with Skeletons)Mukul Narwani, Mark Larson, Tri Nguyen, Yicong Li, Hanspeter Pfister, Donglai Wei,
Nir Shavit, Lu Mi, Alexandra Pacureanu, Wei-Chung Lee, Aaron Kuan
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Neuroimage Informatics at the Microscale and MesoscaleJingpeng Wu, Donglai Wei, Anan Li, Linqing Feng, Shang Mu
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MitoEM Challenge: Large-scale 3D Mitochondria Instance SegmentationDonglai Wei, Zudi Lin, Daniel Franco-Barranco, Wenjie Yin, Won-Dong Jang, Xueying
Wang, Ignacio Arganda-Carreras, Jeff Lichtman, Hanspeter Pfister
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RibFrac Challenge: Rib Fracture Detection and ClassificationJiancheng Yang, Xiaoyang Huang, Kaiming Kuang, Jiajun Chen, Liang Jin, Donglai Wei,
Ming Li, Bingbing Ni
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Patents
- US Patent App. 15/223,438 Neal Wadhwa, Tali Dekel, Donglai Wei, Fredo Durand, William T. Freeman: Deviation Magnification: Revealing Departures from Ideal Geometries.
Short Bio
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Born and grown up in China |
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Gradually became lost, ignorant, but arrogant |
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Born again |