The LOTUS Initiative for Open Natural Products Research: wikidata query results

Rutz, Adriano; Bisson, Jonathan; Allard, Pierre-Marie; Wikidata Community

doi:10.5281/zenodo.7534083

CARVIEW

MOTORHOMES

Select Language

HTTP/2 301 date: Sat, 17 Jan 2026 22:26:44 GMT content-length: 0 location: https://doi.org/10.5281/ZENODO.5668854 server: cloudflare vary: Origin expires: Sun, 18 Jan 2026 22:26:44 GMT permissions-policy: interest-cohort=(),browsing-topics=() cf-cache-status: DYNAMIC nel: {"report_to":"cf-nel","success_fraction":0.0,"max_age":604800} strict-transport-security: max-age=31536000; includeSubDomains; preload report-to: {"group":"cf-nel","max_age":604800,"endpoints":[{"url":"https://a.nel.cloudflare.com/report/v4?s=paYTRmlSlEXbUQQHS3E6RZtMoGips1NLYM47CLUnBLmJ6UxOAJXmBpo56Hvpa9g82KNtPGGlvhItH%2BzqcW9WPv%2FwMbzbgQ%3D%3D"}]} cf-ray: 9bf946a21e46d817-BLR alt-svc: h3=":443"; ma=86400 HTTP/2 302 date: Sat, 17 Jan 2026 22:26:44 GMT content-type: text/html;charset=utf-8 location: https://zenodo.org/record/5668854 server: cloudflare vary: Origin vary: Accept expires: Sat, 17 Jan 2026 23:11:56 GMT permissions-policy: interest-cohort=(),browsing-topics=() cf-cache-status: DYNAMIC nel: {"report_to":"cf-nel","success_fraction":0.0,"max_age":604800} strict-transport-security: max-age=31536000; includeSubDomains; preload report-to: {"group":"cf-nel","max_age":604800,"endpoints":[{"url":"https://a.nel.cloudflare.com/report/v4?s=kX84lK9qscF1E6aj1kIDo0S%2BEb%2FkpLP4ohP2e7W8zHSuYDAJ0PMeBguxMQhVYVZpyPk1Eh5FNTRaf5ZNQxmTKpNCZ5N1nA%3D%3D"}]} cf-ray: 9bf946a25e66d817-BLR alt-svc: h3=":443"; ma=86400 HTTP/1.1 301 MOVED PERMANENTLY server: nginx date: Sat, 17 Jan 2026 22:26:44 GMT content-type: text/html; charset=utf-8 content-length: 219 location: /records/5668854 x-ratelimit-limit: 133 x-ratelimit-remaining: 129 x-ratelimit-reset: 1768688827 retry-after: 22 permissions-policy: interest-cohort=() x-frame-options: sameorigin x-xss-protection: 1; mode=block x-content-type-options: nosniff content-security-policy: default-src 'self' fonts.googleapis.com *.gstatic.com data: 'unsafe-inline' 'unsafe-eval' blob: zenodo-broker.web.cern.ch zenodo-broker-qa.web.cern.ch maxcdn.bootstrapcdn.com cdnjs.cloudflare.com ajax.googleapis.com webanalytics.web.cern.ch strict-transport-security: max-age=31556926; includeSubDomains referrer-policy: strict-origin-when-cross-origin set-cookie: session=d3bc47e352fab3bb_696c0ca4.lwGpWgvTtHpivKpof87TvRveRb0; Expires=Thu, 22 Jan 2026 22:26:44 GMT; Secure; HttpOnly; Path=/; SameSite=Lax strict-transport-security: max-age=15768000 x-request-id: 144cfa7b0d547d7dd40a124508dbd147 set-cookie: 5569e5a730cade8ff2b54f1e815f3670=4c88e46374e4e775774920ba308e23ac; path=/; HttpOnly; Secure; SameSite=None HTTP/1.1 302 FOUND server: nginx date: Sat, 17 Jan 2026 22:26:45 GMT content-type: text/html; charset=utf-8 content-length: 219 location: /records/7534083 x-ratelimit-limit: 133 x-ratelimit-remaining: 128 x-ratelimit-reset: 1768688827 retry-after: 21 permissions-policy: interest-cohort=() x-frame-options: sameorigin x-xss-protection: 1; mode=block x-content-type-options: nosniff content-security-policy: default-src 'self' fonts.googleapis.com *.gstatic.com data: 'unsafe-inline' 'unsafe-eval' blob: zenodo-broker.web.cern.ch zenodo-broker-qa.web.cern.ch maxcdn.bootstrapcdn.com cdnjs.cloudflare.com ajax.googleapis.com webanalytics.web.cern.ch strict-transport-security: max-age=31556926; includeSubDomains referrer-policy: strict-origin-when-cross-origin set-cookie: session=d3bc47e352fab3bb_696c0ca4.lwGpWgvTtHpivKpof87TvRveRb0; Expires=Thu, 22 Jan 2026 22:26:45 GMT; Secure; HttpOnly; Path=/; SameSite=Lax strict-transport-security: max-age=15768000 x-request-id: e32217db2059f68af025f093149c3592 HTTP/1.1 200 OK server: nginx date: Sat, 17 Jan 2026 22:26:45 GMT content-type: text/html; charset=utf-8 transfer-encoding: chunked vary: Accept-Encoding link: ; rel="author" , ; rel="author" , ; rel="author" , ; rel="cite-as" , ; rel="describedby" ; type="application/dcat+xml" , ; rel="describedby" ; type="application/json" , ; rel="describedby" ; type="application/ld+json" , ; rel="describedby" ; type="application/ld+json;profile="https://datapackage.org/profiles/2.0/datapackage.json"" , ; rel="describedby" ; type="application/marcxml+xml" , ; rel="describedby" ; type="application/vnd.citationstyles.csl+json" , ; rel="describedby" ; type="application/vnd.datacite.datacite+json" , ; rel="describedby" ; type="application/vnd.datacite.datacite+xml" , ; rel="describedby" ; type="application/vnd.geo+json" , ; rel="describedby" ; type="application/vnd.inveniordm.v1+json" , ; rel="describedby" ; type="application/vnd.inveniordm.v1.full+csv" , ; rel="describedby" ; type="application/vnd.inveniordm.v1.simple+csv" , ; rel="describedby" ; type="application/x-bibtex" , ; rel="describedby" ; type="application/x-dc+xml" , ; rel="describedby" ; type="text/x-bibliography" , ; rel="item" ; type="text/tab-separated-values" , ; rel="item" ; type="text/tab-separated-values" , ; rel="item" ; type="text/tab-separated-values" , ; rel="item" ; type="text/tab-separated-values" , ; rel="license" , ; rel="type" , ; rel="type" , ; rel="linkset" ; type="application/linkset+json" x-ratelimit-limit: 133 x-ratelimit-remaining: 127 x-ratelimit-reset: 1768688827 retry-after: 21 permissions-policy: interest-cohort=() x-frame-options: sameorigin x-xss-protection: 1; mode=block x-content-type-options: nosniff content-security-policy: default-src 'self' fonts.googleapis.com *.gstatic.com data: 'unsafe-inline' 'unsafe-eval' blob: zenodo-broker.web.cern.ch zenodo-broker-qa.web.cern.ch maxcdn.bootstrapcdn.com cdnjs.cloudflare.com ajax.googleapis.com webanalytics.web.cern.ch strict-transport-security: max-age=31556926; includeSubDomains referrer-policy: strict-origin-when-cross-origin set-cookie: session=d3bc47e352fab3bb_696c0ca4.lwGpWgvTtHpivKpof87TvRveRb0; Expires=Thu, 22 Jan 2026 22:26:45 GMT; Secure; HttpOnly; Path=/; SameSite=Lax strict-transport-security: max-age=15768000 x-request-id: e618c891a1f1aa7718a010542fea635b content-encoding: gzip The LOTUS Initiative for Open Natural Products Research: wikidata query results

Published September 16, 2022 | Version v4

Dataset Open

The LOTUS Initiative for Open Natural Products Research: wikidata query results

1. University of Geneva
2. University of Illinois at Chicago
3. University of Fribourg
4. https://www.wikidata.org/

Wikidata query results returned by the downloadLotus module of the https://github.com/lotusnprod/lotus-wikidata-interact program.

See details of the module here https://github.com/lotusnprod/lotus-wikidata-interact/blob/main/downloadLotus/README.md

This dataset is constituted of 4 tables.

compounds.tsv - chemical structures metadata (wikidataId, canonicalSmiles, isomericSmiles, inchi, inchiKey)
references.tsv - bibliographical references metadata (wikidataId, pipe separated DOIs, titles)
taxa.tsv - biological organisms metadata (wikidataId, pipe separated names, taxa rank)
compound_reference_taxon.tsv - the documented structure-organism pairs

This dataset includes not only the outputs of the LOTUS processing pipeline (available here https://doi.org/10.5281/zenodo.5665295 ) but also any of wikidata chemical compounds having the found in taxon property (https://www.wikidata.org/wiki/Property:P703) and their associated organisms and documenting references.

Files

Files (185.5 MB)

Name	Size	Download all
compound_reference_taxon.tsv md5:514fa04a6213a14bee6e303a5f901c3c	81.2 MB	Download
compounds.tsv md5:4288bf4db4e1cec05a368c74d11655f2	87.9 MB	Download
references.tsv md5:55bbaf039263366e86f4f5228ee56bf2	13.9 MB	Download
taxa.tsv md5:4071b4da38fd5547a8627f1b516c8d97	2.5 MB	Download

Views

Downloads

Show more details

	All versions	This version
Views	2,192	698
Downloads	1,348	446
Data volume	88.0 GB	25.3 GB

More info on how stats are collected....

DOI

Resource type

Dataset

Publisher

Zenodo

License: Creative Commons Attribution 4.0 International

The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited. Read more

Technical metadata

Created: January 13, 2023
Modified: January 14, 2023

Original Source | Taken Source

The LOTUS Initiative for Open Natural Products Research: wikidata query results

Creators

Description

Files

Files (185.5 MB)