| CARVIEW |
Select Language
HTTP/1.1 302 Found
Date: Mon, 19 Jan 2026 17:47:11 GMT
Server: Caddy
Alt-Svc: h3=":443"; ma=2592000
Content-Length: 0
Content-Type: text/html; charset=utf-8
Location: /job/analysis/create/
Referrer-Policy: same-origin
X-Content-Type-Options: nosniff
X-Frame-Options: DENY
HTTP/1.1 200 OK
Date: Mon, 19 Jan 2026 17:47:12 GMT
Server: Caddy
Alt-Svc: h3=":443"; ma=2592000
Content-Length: 12918
Content-Type: text/html; charset=utf-8
Referrer-Policy: same-origin
Vary: Cookie
X-Content-Type-Options: nosniff
X-Frame-Options: DENY
Set-Cookie: csrftoken=XxEZmavV566Dv89D4QIE4IW9tjEZcUJRQ6EGnwpTZGoEP1fqMBJSey44M6FOeiF0; expires=Mon, 18 Jan 2027 17:47:12 GMT; Max-Age=31449600; Path=/; SameSite=Lax
New job
The newest DeepSEA model can be found at https://hb.flatironinstitute.org/deepsea/
What is DeepSEA?
DeepSEA is a deep learning-based algorithmic framework for predicting the chromatin effects of sequence alterations with single nucleotide sensitivity. DeepSEA can accurately predict the epigenetic state of a sequence, including transcription factors binding, DNase I sensitivities and histone marks in multiple cell types, and further utilize this capability to predict the chromatin effects of sequence variants and prioritize regulatory variants.
FASTA format:
- Each section starts with '>'.
- The sequence has to have length of 1000bp.
- Allowed nucleic acid codes: ATCGatcg (lowercases are treated the same of uppercases).
BED format:
- Each line has at least 3 tab separated fields.
- The first column: Chromosome name (hg19). (check hg19 chromosome list)
- The second column: Start Position (hg19). A non-negative integer within chromosome length. (check hg19 chromosome list)
- The third column: End Position (hg19). A non-negative integer within chromosome length.
- The difference in values between Start and End Position should be 1000 or less (We only use the center positions. See help page for details).
VCF format:
- Each line has at least 5 tab separated fields.
- The first column: Chromosome name (hg19). (check hg19 chromosome list)
- The second column: Position (hg19). A positive integer within chromosome length. (check hg19 chromosome list)
- The third column: Variant name. This field can be left empty.
- The fourth column: Reference allele. One or more upper case codes from ATCG. Maximum 100 characters.
- The fifth column: Alternative allele. Empty or contain one or more upper case codes from ATCG. Maximum 100 characters.