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Releases · refresh-bio/KMC · GitHub
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Releases: refresh-bio/KMC
Releases · refresh-bio/KMC
KMC 3.2.4
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Assets 7
KMC 3.2.3
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Changelog:
- a couple of bugfixes related to input reading in some extreme cases
Assets 7
KMC 3.2.2
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Changelog:
- experimental ARM support
- bz2 support dropped
Assets 7
KMC 3.2.1
13b9b04
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Changelog:
- Small fixes related to counting k-mers from KMC database
Assets 5
KMC 3.2.0
cc843b8
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Changelog:
- KFF support
- possibility to estimate k-mer abundance histogram with ntCard algorithm
- possibility to use KMC from C++ code using API
- possibility to store only k-mers in the database (no counters)
- bugfixes
- experimental and approximate homopolymer k-mer counting
- code cleanups
- small optimizations
Assets 5
1 person reacted
KMC 3.1.1
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Changelog:
- drop asmlib dependency
- drop vectorclasslib dependency
- experimental python wrapper for kmc API
- support reads of any length (for now only for fastq format)
- fixes related to gzipped input files
- fix for a case when there is no end of line after last line in the input file
- other small bug fixes
Assets 5
KMC 3.1.1RC1
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A couple of bug fixes.
Assets 2
KMC 3.1.0
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Changelog:
- Support for BAM input files
- New option in kmc_tools that allows to set specified value as a counter of each k-mer in database
- Option to not create output database was added (in some cases only stats produced by KMC are sufficient)
- Option to save execution summary in JSON format was added
- New option in kmc_tools filter operation was added: hard mask (replace with Ns all symbols in a read that are part of invalid k-mer)
- Small bug fixes
Assets 5
KMC 3.0.1
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Minimal changes that allows to compile KMC with g++-4.8.
Assets 2
KMC 3.0.0
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Main changes:
- gzipped files are handled more efficiently
- the second phase of algorithm is faster due to new sorting subroutine and other optimizations especially for larger k
- kmc_tools functionality was extended
Assets 5
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