You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
genomic range indexing for overlap queries & joins
in-SQL utility functions, e.g. reverse-complement DNA, parse "chr1:2,345-6,789"
automatic streaming storage compression (also available standalone)
reading directly from HTTP(S) URLs (also available standalone)
pre-tuned settings for "big data"
This November 2021 poster discusses the context and long-run ambitions:
Our Colab notebook demonstrates key features with Python, one of several language bindings.
USE AT YOUR OWN RISK: This project is not associated with the SQLite developers. The database storage extensions are designed to preserve ACID transaction safety, but they're young and unlikely to be totally bug-free.
Most will prefer to install a pre-built shared library (see above). To build from source, see our Actions yml (Ubuntu 20.04) or Dockerfile (CentOS 7) used to build the more-portable releases. Briefly, you'll need:
C++11 build system
CMake ≥ 3.14
Dev packages: SQLite ≥ 3.31.0, Zstandard ≥ 1.3.4, libcurl