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MinHash alignment process (MHAP pronounced MAP): locality sensitive hashing to detect overlaps and utilities. This is the development branch, please use the latest tagged.
Build
You must have a recent JDK and Apache Maven available. To checkout and build run:
git clone https://github.com/marbl/MHAP.git
cd MHAP
mvn install
Maven executables vary by system, it could also be maven/mvn/mv32, depending on your installation. For a quick user-quide, run:
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
https://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
About
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities