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1. scverse/scirpy scverse/scirpy Public

   A scanpy extension to analyse single-cell TCR and BCR data.

   Python 234 39

2. Boehringer-Ingelheim/dso Boehringer-Ingelheim/dso Public

   Data Science Operations (dso) command line tool

   Python 41 2

3. icbi-lab/infercnvpy icbi-lab/infercnvpy Public

   Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

   Python 163 28

4. nf-core/scrnaseq nf-core/scrnaseq Public

   Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

   Nextflow 283 193

5. rstudio-server-conda rstudio-server-conda Public

   Run Rstudio Server in a conda environment

   Shell 247 50

6. omnideconv/immunedeconv omnideconv/immunedeconv Public

   A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

   R 498 101