What's Changed

• Rotate transformation is not applied about the center of an image by @NMiklave in #1728
• docs: add caitlynelliott56 as a contributor for code, ideas, and tutorial by @allcontributors[bot] in #1737
• docs: add k034b363 as a contributor for doc, test, and 3 more by @allcontributors[bot] in #1738
• docs: add zhaYdamenaceee as a contributor for tutorial by @allcontributors[bot] in #1739
• Changes made to jupyter.md by @caitlynelliott56 in #1734
• Dilation helper by @joshqsumner in #1741
• Update train kmeans source file by @emmanuel-ferdman in #1747
• Quiet print statements from pcv.homology.acute by @HaleySchuhl in #1730
• Report size marker warning message by @caitlynelliott56 in #1735
• Add support for automatic size scaling using color cards by @HaleySchuhl in #1726
• Regional filter for color card detection by @joshqsumner in #1731
• General rect filter by @joshqsumner in #1740
• Add color card detection squareness parameters by @HaleySchuhl in #1732
• color card corners error by @joshqsumner in #1743
• Check color card squares by @joshqsumner in #1745
• add nano color card support in size scaling by @HaleySchuhl in #1748
• Fix single line of missing code coverage by @nfahlgren in #1751
• Update kmeans inputs by @nfahlgren in #1752

New Contributors

• @caitlynelliott56 made their first contribution in #1734

Full Changelog: v4.8...v4.9

What's Changed

• Removed unnecessary comprehension by @kaitlynrying in #1558
• Add check to train kmeans that inputs must be np arrays by @k034b363 in #1683
• docs: add abrown-37 as a contributor for ideas by @allcontributors in #1698
• Morphology angle Outputs dtype bugfix by @HaleySchuhl in #1696
• Docs update : mvapp link updated and add link to pcvr by @HaleySchuhl in #1694
• Fix colors in visualize.colorize_masks by @k034b363 in #1702
• Update array stacking for color standard processing by @emmanuel-ferdman in #1703
• Add segment_ends and Update morphology tips outputs by @HaleySchuhl in #1644
• update calculation of longest path in analyze.size by @HaleySchuhl in #1700
• Create helpers for color conversion by @nfahlgren in #1708
• Migrate tutorials to the website by @HaleySchuhl in #1709
• Add pcv.transform.mask_color_card function by @HaleySchuhl in #1707
• Add global size parameters to Params class by @HaleySchuhl in #1712
• adding nd2 as a image read mode by @annacasto in #1695
• Add NDCI to spectral indices supported by @HaleySchuhl in #1714
• 1704 cmyk plotting and threshold by @NMiklave in #1705
• docs: add NMiklave as a contributor for code by @allcontributors in #1716
• Create a logical operation helper function by @nfahlgren in #1715
• Pin scipy to <1.16 by @nfahlgren in #1725
• Size scaling implementation in analysis functions by @HaleySchuhl in #1717
• morphology.segment_skeleton returned segment_objects to list by @HaleySchuhl in #1720
• Reduce cyclomatic complexity readbayer by @nfahlgren in #1723

New Contributors

• @NMiklave made their first contribution in #1705

Full Changelog: v4.7...v4.8

What's Changed

• adding json2csv to run-workflow by @joshqsumner in #1658
• docs: add eseigeldanf as a contributor for bug, tutorial, and doc by @allcontributors in #1661
• changing parallelization defaults by @joshqsumner in #1654
• docs: add trogers623 as a contributor for tutorial, and doc by @allcontributors in #1662
• docs: add Sunitalama2 as a contributor for tutorial, and doc by @allcontributors in #1663
• docs: add clhendrikse as a contributor for tutorial, and doc by @allcontributors in #1665
• Update d type in fill_holes.py check by @eseigel in #1668
• Add deprecation warning about label from the detect color card function by @HaleySchuhl in #1664
• Parallelization docs linking by @joshqsumner in #1653
• Fix mask kmeans output type by @k034b363 in #1648
• updating install instructions by @annacasto in #1656
• Update closing.py by @eseigel in #1669
• Linking to scribe tutorial for parallelization by @joshqsumner in #1657
• updating the getting started page by @annacasto in #1659
• Update crop_position_mask.py by @eseigel in #1670
• add metadata to _package_index in spectral_index.py by @HaleySchuhl in #1673
• Update PlantCV installation instructions and conda environment file to use only the conda-forge channel by @nfahlgren in #1681
• add tassel tutorial to gallery (merge updates to tutorial repo first) by @HaleySchuhl in #1642
• Added background image input to visualize.pseudocolor by @rayn-alex in #1680
• Update pinnings to NumPy v2 by @nfahlgren in #1687

New Contributors

• @eseigel made their first contribution in #1668

Full Changelog: v4.6...v4.7

What's Changed

• Speed improvements for creating multiple ROIs by @nfahlgren in #1584
• Update obj props source code by @emmanuel-ferdman in #1611
• docs: add emmanuel-ferdman as a contributor for bug, and doc by @allcontributors in #1612
• docs: add jbraley1107 as a contributor for review, and userTesting by @allcontributors in #1614
• Obj size ecdf docs bugfix by @HaleySchuhl in #1621
• docs: add hkmanching as a contributor for bug by @allcontributors in #1622
• Kmeans grayscale by @leafism9 in #1570
• update prune _debug to plot the other debug img by @HaleySchuhl in #1619
• Make color card chip size a metadata term & Enhance debug pcv.transform.detect_color_card by @HaleySchuhl in #1609
• Minor example code fix by @mlohbihler in #1627
• docs: add mlohbihler as a contributor for bug, and doc by @allcontributors in #1634
• Update arabidopsis_multi_plant_tutorial.md by @zeeuqsze in #1628
• Update seed_analysis_tutorial.md by @zeeuqsze in #1631
• Update morphology_tutorial.md by @zeeuqsze in #1630
• Update watershed_segmentation_tutorial.md by @zeeuqsze in #1632
• docs: add jbraley1107 as a contributor for bug by @allcontributors in #1636
• Auto color correct wrapper by @HaleySchuhl in #1625
• 1615 adding houghcircles by @maliagehan in #1616
• Update grayscale_tutorial.md by @zeeuqsze in #1633

New Contributors

• @emmanuel-ferdman made their first contribution in #1611
• @leafism9 made their first contribution in #1570
• @mlohbihler made their first contribution in #1627

Full Changelog: v4.5.1...v4.6

What's Changed

• Added NPCI and GLI indices to spectral_index by @rayn-alex in #1593
• Add metadata to outputs by @HaleySchuhl in #1594
• mac-and-windows-install-docs by @annacasto in #1586
• Update warn to utilize the verbose global parameter by @nfahlgren in #1600

Full Changelog: v4.5...v4.5.1

What's Changed

• update-to-jupyter-notebook-instructions by @annacasto in #1587
• Fixed bug: crash when ROI was empty by @rayn-alex in #1589
• Add geospatial metadata attribute to spectral_data class by @k034b363 in #1595

Full Changelog: v4.4...v4.5

What's Changed

• Pin NumPy to v1.x by @nfahlgren in #1560
• Using generators instead of list comprehension by @natejly in #1544
• Adding missing docstrings by @natejly in #1547
• Deepsource f string fix by @natejly in #1542
• Style fixes by @natejly in #1543
• replacing implicit enumerate by @natejly in #1539
• added-buttons-to-public by @ghernandez-57 in #1524
• added google colab and github buttons to thermal tutorial by @ghernandez-57 in #1527
• add buttons to hyperspectral_smf_tutorial by @ghernandez-57 in #1530
• add google colab and github buttons to machine_learning_tutorial.md by @ghernandez-57 in #1531
• Moved self's "n" attribute initialization to init by @natejly in #1528
• Unnecessary lambda removal by @natejly in #1540
• 1553-combined-object-filter by @k034b363 in #1555
• Constella reworks by @natejly in #1541
• Suppress divide by zero and invalid number warnings by @nfahlgren in #1563
• Turn plotting off after use in tests to avoid warnings by @nfahlgren in #1565
• Fix casting issues that trigger NumPy deprecation warnings by @nfahlgren in #1564
• auto_grid error handling by @nfahlgren in #1562
• Add geospatial attributes to spectral_data class by @k034b363 in #1580
• Add quality control for image color by @kmurphy61 in #1574
• Add kmeans cli by @k034b363 in #1571
• Add "Quick Cutto" ROI function by @HaleySchuhl in #1576
• 1575 image tiling by @k034b363 in #1578

Full Changelog: v4.3.1...v4.4

What's Changed

• Prune test and doc files from sdist by @nfahlgren in #1551

Full Changelog: v4.3...v4.3.1

What's Changed

• fix-PY-W0069 by @k034b363 in #1433
• docs: add k034b363 as a contributor for code by @allcontributors in #1437
• fix-PYL-R1705 by @k034b363 in #1432
• fix-PTC-W0010 by @k034b363 in #1435
• fix part of PYL-R1710 by @k034b363 in #1438
• Randomize color order default for pcv.watershed() by @tj-schultz in #1441
• docs: add tj-schultz as a contributor for code by @allcontributors in #1445
• Change None values to none strings by @nfahlgren in #1442
• fix-PYL-C0209 by @k034b363 in #1439
• Add min_size to detect_color_card kwargs by @HaleySchuhl in #1449
• visualize.colorspaces.py bugfix by @HaleySchuhl in #1451
• Deepsource fix remove extra line return in init file by @HaleySchuhl in #1447
• 1436 merging function by @k034b363 in #1446
• Update codecov action by @nfahlgren in #1462
• Add pcv.filters.eccentricity by @HaleySchuhl in #1430
• Add DEEPSOURCE_DSN to environment by @nfahlgren in #1464
• Correct camera distortions using checkerboard calibration by @annacasto in #1422
• Improved handling of empty submasks in analyze.spectral_reflectance by @rayn-alex in #1463
• Changed label from segment_sort output obs access to params value by @tj-schultz in #1458
• docs: add tj-schultz as a contributor for code, and bug by @allcontributors in #1465
• docs: add rayn-alex as a contributor for code, bug, and question by @allcontributors in #1466
• Run pytest on the whole project directory by @nfahlgren in #1469
• casted dict keys into list to avoid type error by @natejly in #1468
• docs: add natejly as a contributor for code by @allcontributors in #1470
• Exclude configs from coverage analysis by @nfahlgren in #1471
• fixing assigning result of a function call with no return value by @natejly in #1467
• Exclude more files from coverage analysis by @nfahlgren in #1472
• Add method to quickly filter binary images by @nfahlgren in #1477
• New function analyze.distribution by @kmurphy61 in #1473
• Fixed uninformative assert statements in tests for transform.merge_images() by @k034b363 in #1480
• Bump supported versions of Python to 3.9-3.11 by @nfahlgren in #1491
• Add kmeans classifier function by @k034b363 in #1478
• update _make_pseudo_rgb with more accurate target wavelength for red by @HaleySchuhl in #1492
• Fix bug in plotting debug mode by @nfahlgren in #1496
• fix-PYL-W0612 by @k034b363 in #1497
• Added fatal_error for incorrect block_size value in detect_color_card by @tj-schultz in #1457
• Added tuple check to compare variables by @natejly in #1495
• Removing list comprehension to allow for short circuit evaluation by @natejly in #1494
• Removed generator in threshold_methods.py by @kaitlynrying in #1448
• docs: add kaitlynrying as a contributor for code by @allcontributors in #1501
• Remove deprecated files by @nfahlgren in #1499
• Rois debug numbering by @HaleySchuhl in #1488
• Fixed error in documentation for camera calibration by @annacasto in #1505
• Clean up pytest errors by @nfahlgren in #1517
• draw_roi bugfix by @HaleySchuhl in #1511
• parallel docs for windows Update by @HaleySchuhl in #1519
• Update watershed.py to make the function return labels by @HaleySchuhl in #1482
• Add kmeans tutorial by @k034b363 in #1512
• bugfix for roi_type="largest" in roi.filter by @HaleySchuhl in #1518
• Adding simple rgb tutorial to the tutorial gallergy by @annacasto in #1502
• Adding camera calibration tutorial by @annacasto in #1506
• add buttons to vis tutorial by @ghernandez-57 in #1521
• docs: add ghernandez-57 as a contributor for code, and doc by @allcontributors in #1525
• Added buttons to vis-nir tutorial by @ghernandez-57 in #1522
• google colab button to grayscale tutorial by @ghernandez-57 in #1523
• affine_color_correct docs - code example calling wrong function by @HaleySchuhl in #1533
• Read images over HTTP by @nfahlgren in #1532

New Contributors

• @k034b363 made their first contribution in #1433
• @tj-schultz made their first contribution in #1441
• @rayn-alex made their first contribution in #1463
• @natejly made their first contribution in #1468
• @kaitlynrying made their first contribution in #1448
• @ghernandez-57 made their first contribution in #1521

Full Changelog: v4.2.1...v4.3

What's Changed

• Update PyPi deploy workflow to use OIDC authentication by @nfahlgren in #1424

Full Changelog: v4.2...v4.2.1