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colindaven (Colin Davenport) · GitHub
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Colin Davenport colindaven
Bioinformatician at KWS SAAT SE. Nextflow, bioinformatics, metagenomics. My code is unfortunately mostly private.
- Germany
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MHH-RCUG/nf_wochenende
MHH-RCUG/nf_wochenende PublicA nextflow version of the Wochenende reference metagenome binning and visualization pipeline
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MHH-RCUG/Wochenende
MHH-RCUG/Wochenende PublicDeprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
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rs_demultiplex
rs_demultiplex PublicSimple demultiplexing of FASTQ, one oligo (barcode) at a time
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blacklister
blacklister PublicImprove your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools
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guppy_on_slurm
guppy_on_slurm PublicSplitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
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