feature: Respect the file information for languages from the API CF-1…
…742 (#164)
* feature: Respect the file information for languages from the API CF-1742
* Add integration test for trivy a and pylint CF-1742
* tests: Add the files array to the tests CF-1742
* tests: Add the expected files to the trivy expected yamls
* fix: Only consider LanguageFiles from the API for Trivy CF-1742

Revert "hotfix: Disable file extensions check during analysis (#159)" (…
…#163)
This reverts commit 6c9c7f2.
Enables back checking for file extensions

fix: sarif output (#162)

hotfix: Disable file extensions check during analysis (#159)

refactor: Consolidate file permission constants and eliminate hardcod…
…ed values (#158)
- Remove duplication between utils/files.go and constants/permissions.go
- Delete utils/files.go and standardize on constants package for permissions  
- Update 14 files to use constants.DefaultFilePerms and constants.DefaultDirPerms
- Replace hardcoded 0644 and 0755 values with named constants in tool runners
- Improve code maintainability with single source of truth for file permissions

feature: Replace hardcoded tool language mappings with API-driven con…
…figuration [PLUTO-1430] (#155)
feature: Replace hardcoded tool language mappings with API-driven configuration
    Remove static DefaultToolLanguageMap with 60+ hardcoded entries
    Integrate /api/v3/tools and /api/v3/languages/tools APIs
    Separate remote/local mode logic for cleaner architecture
    Eliminate code duplication between API functions
    Enhance repository language detection for remote mode
    Remove special treatment for trivy and codacy-enigma-cli
    Update all integration tests to match API-driven behavior
BREAKING: Language configurations now require API access
BENEFIT: Always up-to-date mappings, no manual maintenance needed
Closes: PLUTO-1430

fix: Update API token instructions in welcome message (#157)
- Revised the welcome message to direct users to the Codacy website for obtaining their API token, enhancing clarity and accessibility of information.
- Removed outdated instructions regarding the location of the Project API token in the Codacy interface.

fix: Update welcome message and command validation (#156)
- Changed the check from the existence of the .codacy directory to the codacy.yaml file.
- Updated the welcome message to provide clearer instructions for initializing with a Codacy account.
- Added "update" command to the list of commands that can skip validation.
- Improved overall clarity and user guidance in the CLI output.

feature: Discover command (#152)
Implement configuration discovery feature with comprehensive testing
- Add configuration discovery logic to automatically detect and generate tool configurations
- Refactor tool UUID selection logic for better reliability
- Update PMD plugin version configuration
- Add extensive unit tests for configuration management and file detection
- Implement integration tests for config discovery across multiple languages
- Fix languages-config file generation during discovery process
- Add sample files and expected configurations for Java, Dart, JavaScript, and Python
- Update integration test runner to support config discovery scenarios
This feature enables automatic detection and setup of appropriate tool configurations
based on project structure and file types, significantly improving the initial
setup experience for users.

Feature/run it test locally (#151)
Add comprehensive integration test automation with cleanup
- Implement integration test script for automated tool testing
- Add path normalization for cross-platform compatibility
- Integrate cleanup functionality with trap handlers
- Refactor GitHub workflow to use centralized test script
- Ensure proper restoration of original configurations