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Homebrew recipes for CloudBioLinux

This repository contains Homebrew/Linuxbrew recipes for CloudBioLinux. Maintenance for the programs here has moved to the bioconda project. Feel free to use any recipes here. If anyone wants to take ownership of a particular recipe, moving them to homebrew-science ensures you can support them for long term stability.

Name		Name	Last commit message	Last commit date
Latest commit History 303 Commits
README.md		README.md
age-metasv.rb		age-metasv.rb
bcbio-rnaseq.rb		bcbio-rnaseq.rb
bcbio-variation-recall.rb		bcbio-variation-recall.rb
biobambam.rb		biobambam.rb
bwakit.rb		bwakit.rb
cancerit-allelecount.rb		cancerit-allelecount.rb
caveman.rb		caveman.rb
cramtools.rb		cramtools.rb
cufflinks-binary.rb		cufflinks-binary.rb
express-binary.rb		express-binary.rb
flux-simulator.rb		flux-simulator.rb
gatk-framework.rb		gatk-framework.rb
glia.rb		glia.rb
gvcftools.rb		gvcftools.rb
hall-lab-sv-tools.rb		hall-lab-sv-tools.rb
impute2.rb		impute2.rb
isaac-aligner.rb		isaac-aligner.rb
isaac-variant-caller.rb		isaac-variant-caller.rb
libmaus.rb		libmaus.rb
lofreq.rb		lofreq.rb
manta.rb		manta.rb
metal-gwas.rb		metal-gwas.rb
oncofuse.rb		oncofuse.rb
pbgzip.rb		pbgzip.rb
pindel.rb		pindel.rb
platypus-variant.rb		platypus-variant.rb
qsignature.rb		qsignature.rb
qsnp.rb		qsnp.rb
rsem.rb		rsem.rb
rtg-tools.rb		rtg-tools.rb
s3gof3r.rb		s3gof3r.rb
sailfish-cbl.rb		sailfish-cbl.rb
sambamba-binary.rb		sambamba-binary.rb
samtools-library-0.1.rb		samtools-library-0.1.rb
scalpel.rb		scalpel.rb
seqbuster.rb		seqbuster.rb
smash.rb		smash.rb
spades-binary.rb		spades-binary.rb
speedseq.rb		speedseq.rb
staden_io_lib.rb		staden_io_lib.rb
theta2.rb		theta2.rb
tophat-binary.rb		tophat-binary.rb
vardict-java.rb		vardict-java.rb
vardict.rb		vardict.rb
vep.rb		vep.rb
vt.rb		vt.rb
wham.rb		wham.rb

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Homebrew recipes for CloudBioLinux

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