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Tags: TuringLang/Turing.jl
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v0.39.7
[Diff since v0.39.6](v0.39.6...v0.39.7) Update compatibility to AdvancedPS 0.7 and Libtask 0.9. These new libraries provide significant speedups for particle MCMC methods. **Merged pull requests:** - AdvancedPS v0.7 (and thus Libtask v0.9) support (#2585) (@mhauru) - Add changelog for AdvancedPS/Libtask #2585 (#2622) (@penelopeysm) - Bump patch in Project.toml (#2623) (@penelopeysm) **Closed issues:** - Dirac not working properly when assigned in a vector (#2621)
v0.39.6
[Diff since v0.39.5](v0.39.5...v0.39.6) Bumped compatibility of AbstractPPL to include 0.13. **Merged pull requests:** - AbstractPPL@0.13 compat (#2620) (@penelopeysm)
v0.39.5
[Diff since v0.39.4](v0.39.4...v0.39.5) Fixed a bug where sampling with an `externalsampler` would not set the log probability density inside the resulting chain. Note that there are still potentially bugs with the log-Jacobian term not being correctly included. A fix is being worked on. **Merged pull requests:** - Update logp in varinfo when external samplers are used (#2616) (@penelopeysm) **Closed issues:** - Gibbs sampler does not carry through log-prob from an external sampler (#2583)
v0.39.4
[Diff since v0.39.3](v0.39.3...v0.39.4) Bumped compatibility of AbstractPPL to include 0.12. **Merged pull requests:** - Modernise README (#2575) (@penelopeysm) - Gibbs test | Fix dynamic model test in Gibbs sampler suite (#2579) (@AoifeHughes) - Replace 2018 AISTATS conference paper with the latest 2025 ACM paper (#2608) (@sunxd3) - Bump AbstractPPL to 0.12 (#2614) (@penelopeysm) **Closed issues:** - HMM example model with missing data yields Malformed dims error (#1359) - Help with intializing the `getq` function from the tutorials (#1515) - Sampling from prior using return value doesn't work with MvNormal (#1559) - Needs a method to get generated_quantities from the result of an optimization (#1886) - Turing Sampling specified parameters (#1911) - OrdinalLogistic - wrong support? (#1970) - Arraydist and Dirichlet cause stackoverflow error (#1989) - Hidden Markov tutorial crashes (#2074) - Cannot sample from bounded distribution when using Dual types (#2088) - missing keyword arguments not property processed (#2259) - ReverseDiff Error with Vector{Real} Input in Turing Model (#2364) - Remove `hmc.jl` and `mh.jl` in light of upstreamed "getparams" into AbstractMCMC (#2367) - Improve Gibbs dynamic model test (#2402) - Question: MCMChain after VI sampling (#2462) - `parameters` macro for specifying trace manually (aka Turing's `VarInfo`) (#2492) - Automate formatter on PRs (#2596) - Add a support_policy.md (#2601) - How to mimick a discrete bayes net? (#2606) - arraydist() errors with non <:Real data (#2611) - arraydist() errors when custom distribution uses non-Real data (#2612) - Remove DistributionsAD (#2613)
v0.39.3
[Diff since v0.39.2](v0.39.2...v0.39.3) Improved the performance of `Turing.Inference.getparams` when called with an untyped VarInfo as the second argument, by first converting to a typed VarInfo. This makes, for example, the post-sampling Chains construction for `Prior()` run much faster. **Merged pull requests:** - Fix performance of `getparams` on untyped vi (#2605) (@penelopeysm) **Closed issues:** - Prior() sampling takes longer than NUTS() (#2604)
v0.39.2
[Diff since v0.39.1](v0.39.1...v0.39.2) Fixed a bug in the support of `OrderedLogistic` (by changing the minimum from 0 to 1). **Merged pull requests:** - clean up some more imports (#2589) (@penelopeysm) - Remove `DynamicPPL.alg_str` tests (#2591) (@penelopeysm) - Update Project.toml (#2598) (@yebai) **Closed issues:** - Slice sampling as a `Gibbs` sampler (#2300) - Regroup tests in test suite (#2441) - ELBO trace during VI (#2543)
v0.39.1
[Diff since v0.39.0](v0.39.0...v0.39.1) No changes from 0.39.0 — this patch is released just to re-trigger a Documenter.jl run. **Merged pull requests:** - Bump tag for GHA (#2586) (@penelopeysm) **Closed issues:** - Chain construction errors when no variables are recorded (#1436) - Difficulty sampling a model with truncated normal Likelihood (#1722) - documentation for init_params kwarg (#1983)
v0.39.0
[Diff since v0.38.6](v0.38.6...v0.39.0) Breaking changes: Turing's variational inference interface was updated to match version 0.4 version of AdvancedVI.jl. AdvancedVI v0.4 introduces various new features: - location-scale families with dense scale matrices, - parameter-free stochastic optimization algorithms like `DoG` and `DoWG`, - proximal operators for stable optimization, - the sticking-the-landing control variate for faster convergence, and - the score gradient estimator for non-differentiable targets. Please see the [Turing API documentation](https://turinglang.org/Turing.jl/stable/api/#Variational-inference), and [AdvancedVI's documentation](https://turinglang.org/AdvancedVI.jl/stable/), for more details. The Turing.Essential module has been removed. Anything exported from there can be imported from either `Turing` or `DynamicPPL`. The `@addlogprob!` macro is now exported from Turing, making it officially part of the public interface. **Merged pull requests:** - Release: Turing.jl@0.39 (#2517) (@penelopeysm)
v0.38.5
[Diff since v0.38.4](v0.38.4...v0.38.5) Added compatibility with ForwardDiff v1. **Merged pull requests:** - Update to the AdvancedVI@0.4 interface (#2506) (@Red-Portal) - CompatHelper: bump compat for ForwardDiff to 1 for package test, (keep existing compat) (#2523) (@github-actions[bot]) - CompatHelper: add new compat entry for ADTypes at version 1 for package test, (keep existing compat) (#2571) (@github-actions[bot]) - Reorganise code in `src/mcmc/Inference.jl` (#2573) (@penelopeysm) - Clean up old code (#2574) (@penelopeysm) - Rename `mcmc/sample.jl` to `mcmc/abstractmcmc.jl` (#2576) (@yebai) **Closed issues:** - AdvancedVI 0.3 and compatibility with Turing.jl (#2430) - Get rid of src/essential (#2512) - Messy code in literature[Turing.jl: a general-purpose probabilistic programming language] (#2580)
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