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FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

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Folders and files

Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
merged/medical		merged/medical
result		result
Basic_blocks.py		Basic_blocks.py
FusionNet.py		FusionNet.py
README.md		README.md
main.py		main.py

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README

FusionNet_Pytorch

FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

Requirements

Pytorch 0.1.11
Python 3.5.2
wget

Download code

git clone https://github.com/GunhoChoi/FusionNet_Pytorch
cd FusionNet_Pytorch

Download Map data

wget https://people.eecs.berkeley.edu/~tinghuiz/projects/pix2pix/datasets/maps.tar.gz
tar -xzvf maps.tar.gz

Make model directory

mkdir model

Train Model

python3 main.py  -> medical image without augmentation
python3 main_augmented.py  -> map image with naive augmentation

Out of memory error -> change batch_size / img_size / out_dim

Result

Medical Image

Map Image

Original Image / Label Image / Generated Image

Related Works

FusionNet in Tensorflow by Hyungjoo Andrew Cho

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FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

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FusionNet_Pytorch

Requirements

Download code

Download Map data

Make model directory

Train Model

Result

Medical Image

Map Image

Related Works

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