after running archivebox from python installation with the same config I cannot run archivebox in docker because of db error.
pragma integrity check of index.sqlite is without error

cd /storage/data/docs/archivebox
docker-compose up -d
docker-compose run archivebox init

archivebox is up-to-date                                                                                                                                                                      
archivebox_sonic_1 is up-to-date                                                                                                                                                              
[i] [2022-03-24 20:37:27] ArchiveBox v0.6.2: archivebox init                                                                                                                                  
    > /data                                                                                                                                                                                   
                                                                                                                                                                                              
[^] Verifying and updating existing ArchiveBox collection to v0.6.2...                                                                                                                        
----------------------------------------------------------------------                                                                                                                        
                                                                                                                                                                                              
[*] Verifying archive folder structure...                                                                                                                                                     
    + ./archive, ./sources, ./logs...                                                                                                                                                         
    + ./ArchiveBox.conf...                                                                                                                                                                    
                                                                                                                                                                                              
[*] Verifying main SQL index and running any migrations needed...                                                                                                                             
Traceback (most recent call last):                                                                                                                                                            
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/utils.py", line 82, in _execute                                                                                             
    return self.cursor.execute(sql)                                                                                                                                                           
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/sqlite3/base.py", line 411, in execute                                                                                      
    return Database.Cursor.execute(self, query)                                                                                                                                               
sqlite3.DatabaseError: database disk image is malformed                                                                                                                                       
                                                                                                                                                                                              
The above exception was the direct cause of the following exception:                                                                                                                          
                                                                                                                                                                                              
Traceback (most recent call last):                                                                                                                                                            
  File "/usr/local/bin/archivebox", line 33, in <module>                                                                                                                                      
    sys.exit(load_entry_point('archivebox', 'console_scripts', 'archivebox')())                                                                                                               
  File "/app/archivebox/cli/__init__.py", line 140, in main                                                                                                                                   
    run_subcommand(  
  File "/app/archivebox/cli/__init__.py", line 80, in run_subcommand                                                                                                                          
    module.main(args=subcommand_args, stdin=stdin, pwd=pwd)    # type: ignore                                                                                                                 
  File "/app/archivebox/cli/archivebox_init.py", line 43, in main                                                                                                                             
    init(                                                                                                                                                                                     
  File "/app/archivebox/util.py", line 114, in typechecked_function                                                                                                                           
    return func(*args, **kwargs)                                                                                                                                                              
  File "/app/archivebox/main.py", line 328, in init                                                                                                                                           
    for migration_line in apply_migrations(out_dir):                                                                                                                                          
  File "/app/archivebox/util.py", line 114, in typechecked_function                                                                                                                           
    return func(*args, **kwargs)                                                                                                                                                              
  File "/app/archivebox/index/sql.py", line 137, in apply_migrations                                                                                                                          
    call_command("makemigrations", interactive=False, stdout=null)                                                                                                                            
  File "/usr/local/lib/python3.9/site-packages/django/core/management/__init__.py", line 168, in call_command                                                                                 
    return command.execute(*args, **defaults)                                                                                                                                                 
  File "/usr/local/lib/python3.9/site-packages/django/core/management/base.py", line 371, in execute                                                                                          
    output = self.handle(*args, **options)                                                                                                                                                    
  File "/usr/local/lib/python3.9/site-packages/django/core/management/base.py", line 85, in wrapped                                                                                           
    res = handle_func(*args, **kwargs)                                                                                                                                                        
  File "/usr/local/lib/python3.9/site-packages/django/core/management/commands/makemigrations.py", line 101, in handle                                                                        
    loader.check_consistent_history(connection)                                                                                                                                               
  File "/usr/local/lib/python3.9/site-packages/django/db/migrations/loader.py", line 290, in check_consistent_history                                                                         
    applied = recorder.applied_migrations()                                                                                                                                                   
  File "/usr/local/lib/python3.9/site-packages/django/db/migrations/recorder.py", line 77, in applied_migrations                                                                              
    if self.has_table():                                                                                                                                                                      
  File "/usr/local/lib/python3.9/site-packages/django/db/migrations/recorder.py", line 56, in has_table                                                                                       
    tables = self.connection.introspection.table_names(cursor)                                                                                                                                
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/base/introspection.py", line 48, in table_names                                                                             
    return get_names(cursor)                                                                                                                                                                  
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/base/introspection.py", line 43, in get_names                                                                               
    return sorted(ti.name for ti in self.get_table_list(cursor)                                                                                                                               
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/sqlite3/introspection.py", line 74, in get_table_list                                                                       
    cursor.execute("""                                                                                                                                                                        
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/utils.py", line 66, in execute                                                                                              
    return self._execute_with_wrappers(sql, params, many=False, executor=self._execute)                                                                                                       
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/utils.py", line 75, in _execute_with_wrappers                                                                               
    return executor(sql, params, many, context)                                                                                                                                               
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/utils.py", line 84, in _execute                                                                                             
    return self.cursor.execute(sql, params)                                                                                                                                                   
  File "/usr/local/lib/python3.9/site-packages/django/db/utils.py", line 90, in __exit__                                                                                                      
    raise dj_exc_value.with_traceback(traceback) from exc_value                                                                                                                               
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/utils.py", line 82, in _execute                                                                                             
    return self.cursor.execute(sql)                                                                                                                                                           
  File "/usr/local/lib/python3.9/site-packages/django/db/backends/sqlite3/base.py", line 411, in execute                                                                                      
    return Database.Cursor.execute(self, query)                                                                                                                                               
django.db.utils.DatabaseError: database disk image is malformed 

archivebox is up-to-date
archivebox_sonic_1 is up-to-date
ArchiveBox v0.6.2
Cpython Linux Linux-5.13.0-25-generic-x86_64-with-glibc2.28 x86_64
IN_DOCKER=True DEBUG=False IS_TTY=True TZ=UTC SEARCH_BACKEND_ENGINE=sonic
[i] Dependency versions:
 √  ARCHIVEBOX_BINARY     v0.6.2          valid     /usr/local/bin/archivebox                                                    
 √  PYTHON_BINARY         v3.9.5          valid     /usr/local/bin/python3.9                                                     
 √  DJANGO_BINARY         v3.1.10         valid     /usr/local/lib/python3.9/site-packages/django/bin/django-admin.py           
 √  CURL_BINARY           v7.64.0         valid     /usr/bin/curl                                                                
 √  WGET_BINARY           v1.20.1         valid     /usr/bin/wget                                                                
 √  NODE_BINARY           v15.14.0        valid     /usr/bin/node                                                                
 √  SINGLEFILE_BINARY     v0.3.16         valid     /node/node_modules/single-file/cli/single-file                              
 √  READABILITY_BINARY    v0.0.2          valid     /node/node_modules/readability-extractor/readability-extractor              
 √  MERCURY_BINARY        v1.0.0          valid     /node/node_modules/@postlight/mercury-parser/cli.js                         
 √  GIT_BINARY            v2.20.1         valid     /usr/bin/git                                                                 
 -  YOUTUBEDL_BINARY      -               disabled  /usr/local/bin/youtube-dl                                                    
 √  CHROME_BINARY         v90.0.4430.93   valid     /usr/bin/chromium                                                            
 √  RIPGREP_BINARY        v0.10.0         valid     /usr/bin/rg                                                                                                                               
                                                                                                                                                                                              
[i] Source-code locations:                                                                                                                                                                    
 √  PACKAGE_DIR           22 files        valid     /app/archivebox                                                                                                                           
 √  TEMPLATES_DIR         3 files         valid     /app/archivebox/templates                                                                                                                 
 -  CUSTOM_TEMPLATES_DIR  -               disabled                                                                                                                                            
                                                                                                                                                                                              
[i] Secrets locations:                                                                                                                                                                        
 √  CHROME_USER_DATA_DIR  49 files        valid     ./chrome_user_dir                                                                                                                         
 √  COOKIES_FILE          342.3 KB        valid     ./cookies.txt                                                                                                                             
                                                                                                                                                                                              
[i] Data locations:                                                                                                                                                                           
 √  OUTPUT_DIR            20 files        valid     /data                                                                                                                                     
 √  SOURCES_DIR           601 files       valid     ./sources                                                                                                                                 
 √  LOGS_DIR              1 files         valid     ./logs                                                                                                                                    
 √  ARCHIVE_DIR           9601 files      valid     ./archive                                                                                                                                 
 √  CONFIG_FILE           81.0 Bytes      valid     ./ArchiveBox.conf                                                                                                                         
 √  SQL_INDEX             511.2 MB        valid     ./index.sqlite3 

[DEFAULT]
IS_TTY=False
USE_COLOR=False
SHOW_PROGRESS=False
IN_DOCKER=False
ONLY_NEW=True
TIMEOUT=60
MEDIA_TIMEOUT=3600
OUTPUT_PERMISSIONS=755
RESTRICT_FILE_NAMES=windows
URL_BLACKLIST=\.(css|js|otf|ttf|woff|woff2|gstatic\.com|googleapis\.com/css)(\?.*)?$
BIND_ADDR=127.0.0.1:8000
ALLOWED_HOSTS=*
DEBUG=False
SNAPSHOTS_PER_PAGE=40
CUSTOM_TEMPLATES_DIR=None
TIME_ZONE=UTC
SAVE_TITLE=True
SAVE_FAVICON=True
SAVE_WGET=True
SAVE_WGET_REQUISITES=True
SAVE_SINGLEFILE=True
SAVE_READABILITY=True
SAVE_MERCURY=True
SAVE_PDF=True
SAVE_SCREENSHOT=True
SAVE_DOM=True
SAVE_HEADERS=True
SAVE_WARC=True
SAVE_GIT=True
SAVE_MEDIA=False
SAVE_ARCHIVE_DOT_ORG=True
RESOLUTION=1440,2000
CHECK_SSL_VALIDITY=True
MEDIA_MAX_SIZE=750m
CURL_USER_AGENT=Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/90.0.4430.61 Safari/537.36 ArchiveBox/0.6.2 (+https://github.com/ArchiveBox/ArchiveBox/) curl/curl 7.68.0 (x86_64-pc-linux-gnu)
WGET_USER_AGENT=Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/90.0.4430.61 Safari/537.36 ArchiveBox/0.6.2 (+https://github.com/ArchiveBox/ArchiveBox/) wget/GNU Wget 1.20.3
CHROME_USER_AGENT=Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/90.0.4430.61 Safari/537.36 ArchiveBox/{VERSION} (+https://github.com/ArchiveBox/ArchiveBox/)
CHROME_HEADLESS=True
CHROME_SANDBOX=True
USE_INDEXING_BACKEND=True
USE_SEARCHING_BACKEND=True
SEARCH_BACKEND_ENGINE=ripgrep
SEARCH_BACKEND_HOST_NAME=localhost
SEARCH_BACKEND_PORT=1491
SEARCH_BACKEND_PASSWORD=xxxxxxxxxx
SONIC_COLLECTION=archivebox
SONIC_BUCKET=snapshots
SEARCH_BACKEND_TIMEOUT=90
FETCH_TITLE=True
#FETCH_FAVICON=True
FETCH_WGET=True
FETCH_WARC=True
FETCH_PDF=True
FETCH_SCREENSHOT=True
FETCH_DOM=True
FETCH_GIT=True
FETCH_MEDIA=false
SUBMIT_ARCHIVE_DOT_ORG=True
USE_SINGLEFILE=True
USE_CURL=True
USE_WGET=True
USE_READABILITY=True
USE_MERCURY=True
USE_GIT=True
USE_CHROME=True
USE_NODE=True
USE_YOUTUBEDL=True
USE_RIPGREP=True
CURL_BINARY=/usr/bin/curl
GIT_BINARY=/usr/bin/git
WGET_BINARY=/usr/bin/wget
YOUTUBEDL_BINARY=/usr/local/bin/youtube-dl
SECRET_KEY=xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SINGLEFILE_BINARY=/home/kangus/node_modules/single-file/cli/single-file
READABILITY_BINARY=/home/kangus/node_modules/readability-extractor/readability-extractor
MERCURY_BINARY=/home/kangus//node_modules/@postlight/mercury-parser/cli.js
NODE_BINARY=node
RIPGREP_BINARY=rg
CHROME_BINARY=/usr/bin/google-chrome-stable
COOKIES_FILE=/mnt/nfs/OMV_MERGEFS/data/docs/archivebox/cookies.txt
CHROME_USER_DATA_DIR=/mnt/nfs/OMV_MERGEFS/data/docs/archivebox/google-chrome-stable
POCKET_CONSUMER_KEY=None
USER=kangus
PACKAGE_DIR=/home/kangus/.local/lib/python3.8/site-packages/archivebox
TEMPLATES_DIR=/home/kangus/.local/lib/python3.8/site-packages/archivebox/templates
ARCHIVE_DIR=/mnt/nfs/OMV_MERGEFS/data/docs/archivebox/archive
SOURCES_DIR=/mnt/nfs/OMV_MERGEFS/data/docs/archivebox/sources
LOGS_DIR=/mnt/nfs/OMV_MERGEFS/data/docs/archivebox/logs
URL_BLACKLIST_PTN=re.compile('\\.(css|js|otf|ttf|woff|woff2|gstatic\\.com|googleapis\\.com/css)(\\?.*)?$', re.IGNORECASE|re.MULTILINE)
ARCHIVEBOX_BINARY=/home/kangus/.local/bin/archivebox
WGET_AUTO_COMPRESSION=True

# Usage:
#     docker-compose up -d
#     docker-compose run archivebox init
#     echo "https://example.com" | docker-compose run archivebox archivebox add
#     docker-compose run archivebox add --depth=1 https://example.com/some/feed.rss
#     docker-compose run archivebox config --set PUBLIC_INDEX=True
# Documentation:
#     https://github.com/ArchiveBox/ArchiveBox/wiki/Docker#docker-compose
version: "3.7"
services:
    archivebox:
        container_name: archivebox
        # build: .
        image: archivebox/archivebox:latest
        command: server 0.0.0.0:8000
        stdin_open: true
        tty: true
        ports:
            - 8000:8000
        environment:
            - PGID=${PGID}
            - PUID=${PUID}
            - USE_COLOR=True
            - SHOW_PROGRESS=False
            - ONLY_NEW=True
            - DEBUG=True
            - TIMEOUT=180
            - DOCKER_CLIENT_TIMEOUT=120
            - COMPOSE_HTTP_TIMEOUT=120
            - MEDIA_TIMEOUT=3600
            - FETCH_TITLE=True
            - FETCH_WGET=True
            - FETCH_WARC=True
            - FETCH_PDF=True
            - FETCH_SCREENSHOT=True
            - FETCH_DOM=True
            - FETCH_GIT=True
            - FETCH_MEDIA=false
            - SUBMIT_ARCHIVE_DOT_ORG=True
            - USE_SINGLEFILE=True
            - CHECK_SSL_VALIDITY=False
            - FETCH_WGET_REQUISITES=True
            - RESOLUTION=1920,1080
            - SAVE_READABILITY=True
            - WGET_ARGS="--no-verbose --adjust-extension --convert-links --force-directories --backup-converted --span-hosts --no-parent -e robots=off --inet4-only"
            - WGET_USER_AGENT=Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/73.0.3683.75 Safari/537.36
            - CHROME_USER_AGENT=Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/73.0.3683.75 Safari/537.36
            - CHROME_HEADLESS=True
            - CHROME_USER_DATA_DIR=/data/chrome_user_dir
            - SECRET_KEY="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXx"
            #- SINGLEFILE_BINARY="/home/kangus/node_modules/single-file/cli/single-file"
            - MAX_URL_ATTEMPTS=5
            - SAVE_TITLE=True
            - SAVE_PDF=True
            - SAVE_WARC=True
            - SAVE_WGET=True
            - SAVE_SINGLEFILE=True
            - SEARCH_BACKEND_ENGINE=sonic
            - SEARCH_BACKEND_HOST_NAME=sonic
            - SEARCH_BACKEND_PASSWORD=XXXXXXXXXXXX
            - COOKIES_FILE=/data/cookies.txt
        volumes:
            - /etc/localtime:/etc/localtime:ro
            - /storage/data/docs/archivebox:/data
            - /storage/data/docs/archivebox/sonic.cfg:/etc/sonic.cfg:ro
            - /storage/data/docs/archivebox/data/sonic:/var/lib/sonic/store
    sonic:
       image: valeriansaliou/sonic:v1.3.0
       expose:
           - 1491
       environment:
#           - PGID=1000
#           - PUID=1000
           - PUID=${PUID}
           - PGID=${PGID}
           - SEARCH_BACKEND_PASSWORD=XXXXXXXXXXXX
       volumes:
           - /storage/data/docs/archivebox/sonic.cfg:/etc/sonic.cfg:ro
           - /storage/data/docs/archivebox/data/sonic:/var/lib/sonic/store
# docker network create -d bridge my-network
networks:
  my-network:
    external: true