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1. nf-core/eager nf-core/eager Public

   A fully reproducible and state-of-the-art ancient DNA analysis pipeline

   Nextflow 195 87

2. nf-core/rnafusion nf-core/rnafusion Public

   RNA-seq analysis pipeline for detection of gene-fusions

   Nextflow 170 120

3. nf-core/smrnaseq nf-core/smrnaseq Public

   A small-RNA sequencing analysis pipeline

   Nextflow 98 132

4. nf-core/scrnaseq nf-core/scrnaseq Public

   Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

   Nextflow 310 207