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Data resources · BU-ISCIII/SARS-Cov2_analysis Wiki · GitHub
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Data resources
Sara Monzón edited this page Mar 19, 2020
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- Galaxy project
- Virological
- Wisconsin high quality data
- iVAR - not for covid19, but for amplicon-based sequencing data, intrahost variability analysis (used in Zika;Grubaugh et al,Genome Biology, 2019)
We have created a table with all the SRA projects we have found to contain covid19 raw data, you can access the drive table here, be welcome to improve it! drive table
- GISAID is de most complete database where the genomes are being shared. You have to login to download the genomes, but it is completely public.
Primers and probes from RT-PCR schemes collected by WHO
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